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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11903909_11912742_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11903909 - 11912742
Intron Length:
8834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATGCGAATAACT
Flanking Amino Acid:
RKGQLLLAESVLSFIIFICY
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
38
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
84.7
0.78
0.7
80.6
24.7
Minor 5ss
31
-2.2
3.5
43.1
44.2
Minor BPS
44.7
-0.3
2.2
66.37
43.6

Associated Gene:

Gene:
CMTM3
Ensembl Gene ID:
ENSAPLG00000014361
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014973
11899320 - 11912997
13678