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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11920450_11922149_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11920450 - 11922149
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTAACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTATCTCTAACC
Flanking Amino Acid:
WRNVRGHNILGLMYQDASRW
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72
0.5
0.9
63.1
37.2
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
63.1
0.39
1.7
71.79
39.4

Associated Gene:

Gene:
TK2
Ensembl Gene ID:
ENSAPLG00000030486
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037439
11917019 - 11923661
6643