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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11922240_11923548_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11922240 - 11923548
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAG
5'SS Class:
major
3'SS Sequence:
TTTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TAGTTGGTGACT
Flanking Amino Acid:
TMLEQHTRPMISPVRMMERS
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73
37.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
88.7
0.87
0.7
85.2
29.2
Minor 5ss
34.6
-1.8
2.8
38.6
40.9
Minor BPS
44.2
-0.3
2.6
66.78
44.5

Associated Gene:

Gene:
TK2
Ensembl Gene ID:
ENSAPLG00000030486
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042922
11922156 - 11929207
7052