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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11928285_11928614_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11928285 - 11928614
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTGACA
Flanking Amino Acid:
NNTDVSVDLIVYLQTSPEVC
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.4
0.62
1
73.5
40.4
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
66.5
0.51
1.6
77.53
32.1

Associated Gene:

Gene:
TK2
Ensembl Gene ID:
ENSAPLG00000030486
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042922
11922156 - 11929207
7052