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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11928780_11929160_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11928780 - 11929160
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATTTCCA
5'SS Class:
weak_major
3'SS Sequence:
TATGCTTGAAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATGCTTGAAGA
Flanking Amino Acid:
ANVMLKSYPELSLLVSQNKQ
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.1
1.2
50
40.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
47.8
-0.1
1.8
54.4
44.5
Minor 5ss
42.7
-0.8
2.7
51.6
44.8
Minor BPS
51.3
0.04
1.8
65.04
41.5

Associated Gene:

Gene:
TK2
Ensembl Gene ID:
ENSAPLG00000030486
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042922
11922156 - 11929207
7052