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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11939050_11940804_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11939050 - 11940804
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
CATTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGTTTTTCACT
Flanking Amino Acid:
PWRKEIRSLKTFTGNFVYYI
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.9
0.67
0.9
76.7
37
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
58.4
0.35
1.8
74.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026582
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026462
11937544 - 11941134
3591