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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11964096_11965675_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11964096 - 11965675
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCTACACAT
5'SS Class:
weak_major
3'SS Sequence:
GAAATGATACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AATTCCCCAGCT
Flanking Amino Acid:
NAVYPKNTTGNLLVSPLLVA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.4
50.4
46
Major BPS
68
0.45
1
57.8
39
Major PPT
51.9
0.04
1.1
41.3
46.6
Minor 5ss
26.9
-2.7
4
41.1
39.1
Minor BPS
48.9
-0
2.1
73.47
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014466
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015080
11942710 - 11965773
23064