About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12027668_12027756_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12027668 - 12027756
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AATCCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTTTGATAATC
Flanking Amino Acid:
NGSVPEMSPVGTSVTKVTAV
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.9
0.56
0.9
66.4
39.7
Minor 5ss
41.8
-0.9
3
59.5
44.9
Minor BPS
48.8
-0.1
2.2
67.43
38.4

Associated Gene:

Gene:
CDH5
Ensembl Gene ID:
ENSAPLG00000014485
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015184
12019210 - 12030592
11383