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Intron Name: Anas_platyrhynchos_platyrhynchos_12_12028046_12030403_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12028046 - 12030403

Intron Length:

2358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAGG

5'SS Class:

strong_major

3'SS Sequence:

TTATACCTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

TCTCTTTGAATT

Flanking Amino Acid:

DTPLPHHVGKITSSVRNNNA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

75.1

41.1

Major BPS

74.6

0.61

1.4

34.5

Major PPT

75.6

0.58

0.9

67.1

39.9

Minor 5ss

34.5

-1.8

2.8

42.5

44.3

Minor BPS

59.2

0.37

1.4

73.39

38.1

Associated Gene:

Gene:

CDH5

Ensembl Gene ID:

ENSAPLG00000014485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015184

12019210 - 12030592

11383

ENSAPLT00000044345

12019210 - 12030604

11395