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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12208717_12210094_F

Intron Information:

Intron Rank:
128526
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12208717 - 12210094
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GTATCACTGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTTTGTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
52.7
0.06
1.2
53
40.8
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
52.1
0.06
2.2
74.08
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019233
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030150
12207325 - 12210311
2987