About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12474253_12480974_F

Intron Information:

Intron Rank:
136541
Intron Class:
major
Intron Phase:
Intron Coordinates:
12474253 - 12480974
Intron Length:
6722

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTATGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TCTTCCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.2
19.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
78.3
0.64
0.9
73
37.2
Minor 5ss
24.5
-2.9
3.7
35.8
41.1
Minor BPS
66
0.58
1.9
83.49
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023566
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026117
12473589 - 12510928
37340