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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1251300_1263077_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1251300 - 1263077
Intron Length:
11778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCATAAACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATGCATAAACA
Flanking Amino Acid:
HLKVHLRIHTGEKPYKCPHC
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
54.6
0.1
1
47.9
38.5
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
53.1
0.09
2
69.72
42.3

Associated Gene:

Gene:
ZNF536
Ensembl Gene ID:
ENSAPLG00000013219
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026124
1132694 - 1326172
193479
ENSAPLT00000040743
1133042 - 1334633
201592
ENSAPLT00000024577
1249708 - 1315764
66057
ENSAPLT00000029524
1133042 - 1334633
201592
ENSAPLT00000020457
1133042 - 1340131
207090
ENSAPLT00000027507
1249708 - 1346109
96402
ENSAPLT00000013759
1249708 - 1343683
93976
ENSAPLT00000027294
1133042 - 1373085
240044
ENSAPLT00000046286
1133215 - 1421722
288508