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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12732901_12734201_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12732901 - 12734201
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TCTTGTTAAAGT
Flanking Amino Acid:
TGPDPVLVGRLHSDIDSGDG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
87.5
0.84
0.6
84.2
23.8
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
47.5
-0.1
2.3
70.57
47

Associated Gene:

Gene:
CDH11
Ensembl Gene ID:
ENSAPLG00000015154
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015832
12732673 - 12750842
18170