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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12739294_12740747_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12739294 - 12740747
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
AATACGTTATTT
Flanking Amino Acid:
TQEGVVKLKKLLDFETKKSY
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
84.7
0.78
0.8
80.1
32
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
47.5
-0.1
2.3
68.33
42.6

Associated Gene:

Gene:
CDH11
Ensembl Gene ID:
ENSAPLG00000015154
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015832
12732673 - 12750842
18170