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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12740819_12740909_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12740819 - 12740909
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTTCATCAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTAAAACCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAA
Flanking Amino Acid:
VEAANVHIDPNYIFEVQENA
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.05
1.2
48.1
42.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
57.5
0.17
1.2
55.2
42.9
Minor 5ss
29.9
-2.3
3
33.1
35.7
Minor BPS
71.8
0.68
1.3
77.35
32.8

Associated Gene:

Gene:
CDH11
Ensembl Gene ID:
ENSAPLG00000015154
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015832
12732673 - 12750842
18170