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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12742139_12742352_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12742139 - 12742352
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTACACCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTGTTTACAC
Flanking Amino Acid:
HNISVFAVEVHKQHQEAKVP
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.3
0.43
0.8
62.9
33.3
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
51.6
0.03
2.1
70.99
40.7

Associated Gene:

Gene:
CDH11
Ensembl Gene ID:
ENSAPLG00000015154
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015832
12732673 - 12750842
18170