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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12742475_12743286_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12742475 - 12743286
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAA
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
FVCENARSNQQFITISADDK
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
61.2
0.28
1.1
70.6
34.3
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
CDH11
Ensembl Gene ID:
ENSAPLG00000015154
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015832
12732673 - 12750842
18170