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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12743405_12749044_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12743405 - 12749044
Intron Length:
5640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
CTTCTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CCTTCTTTAAAC
Flanking Amino Acid:
NPNFTLRDNRDNTASVLVRR
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
76.3
0.59
0.9
73.4
34.9
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
68.9
0.57
1.4
70.99
40.7

Associated Gene:

Gene:
CDH11
Ensembl Gene ID:
ENSAPLG00000015154
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015832
12732673 - 12750842
18170