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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12770_13598_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12770 - 13598
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ACCACGTGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
GTTCCCTTACAT
Flanking Amino Acid:
SYASGNHVVLVLTDDCMQFL
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
61.9
0.27
1
57.3
42.6
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
62.4
0.47
1.8
79.96
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640