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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12793978_12796574_R

Intron Information:

Intron Rank:
133864
Intron Class:
major
Intron Phase:
Intron Coordinates:
12793978 - 12796574
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.9
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.4
0.91
0.7
88.7
27.9
Minor 5ss
34.9
-1.7
2.8
43.6
43.5
Minor BPS
65.2
0.55
1.8
83.5
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019279
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036748
12793842 - 12798550
4709