Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12796684_12797811_R

Intron Information:

Intron Rank:

133865

Intron Class:

major

Intron Phase:

Intron Coordinates:

12796684 - 12797811

Intron Length:

1128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTGT

5'SS Class:

major

3'SS Sequence:

TTGTCGTGCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

ATTGTGTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.1

63.4

43.3

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

70.8

0.47

41.8

Minor 5ss

37.5

-1.4

3.5

56.6

47.6

Minor BPS

-0.3

2.4

64.52

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019279

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036748

12793842 - 12798550

4709