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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_12797864_12798541_R

Intron Information:

Intron Rank:
133866
Intron Class:
major
Intron Phase:
Intron Coordinates:
12797864 - 12798541
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GCTATCTAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
48.3
-0.1
1.8
57.55
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019279
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036748
12793842 - 12798550
4709