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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13060532_13062734_R

Intron Information:

Intron Rank:
147546
Intron Class:
major
Intron Phase:
Intron Coordinates:
13060532 - 13062734
Intron Length:
2203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.3
0.55
0.9
65.9
40.9
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
63.9
0.52
1.8
83.32
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026742
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036081
13059333 - 13062833
3501