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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1314023_1315465_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1314023 - 1315465
Intron Length:
1443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTGATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGAATCTAAAAT
Flanking Amino Acid:
VCAAFVEGIVKMEEASLCLG
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.9
0.76
0.8
81.1
35.6
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
49.6
0.05
1.8
67.52
42.6

Associated Gene:

Gene:
ZNF536
Ensembl Gene ID:
ENSAPLG00000013219
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024577
1249708 - 1315764
66057