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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13272676_13300190_F

Intron Information:

Intron Rank:
124462
Intron Class:
major
Intron Phase:
Intron Coordinates:
13272676 - 13300190
Intron Length:
27515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
75
0.62
1
65.3
41.5
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017108
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023043
13271871 - 13300477
28607