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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13272676_13363221_F

Intron Information:

Intron Rank:
124466
Intron Class:
major
Intron Phase:
Intron Coordinates:
13272676 - 13363221
Intron Length:
90546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCTTTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
92.1
0.95
0.6
87.5
22.9
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
56.9
0.08
1.8
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017108
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030031
13271871 - 13363581
91711