Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13311226_13313129_F

Intron Information:

Intron Rank:

124468

Intron Class:

major

Intron Phase:

Intron Coordinates:

13311226 - 13313129

Intron Length:

1904

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATACCA

5'SS Class:

major

3'SS Sequence:

GTTCTGCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

TCCTTCAGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

67.2

Major BPS

78.6

0.71

79.6

32.9

Major PPT

80.9

0.7

0.9

77.2

37.1

Minor 5ss

32.3

-2

40.9

44.8

Minor BPS

54.5

0.22

1.8

73.17

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030601

13271871 - 13313242

41372