Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13474766_13478091_R

Intron Information:

Intron Rank:

144024

Intron Class:

major

Intron Phase:

Intron Coordinates:

13474766 - 13478091

Intron Length:

3326

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCTTAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CTCTCCTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

77.1

37.8

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

0.61

0.8

72.7

30.7

Minor 5ss

-1.5

48.7

41.1

Minor BPS

83.5

1.05

1.1

83.03

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024732

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028374

13474439 - 13479860

5422