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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13496021_13535028_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13496021 - 13535028
Intron Length:
39008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TATCTCTAAAAT
Flanking Amino Acid:
SGPEPILVGRLHTDLDPGSS
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
65.8
41.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
29.6
-2.3
3.2
30.1
43
Minor BPS
56.9
0.29
1.8
75.75
40.4

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034736
13495769 - 13626720
130952
ENSAPLT00000026293
13495547 - 13628504
132958
ENSAPLT00000008049
13495574 - 13626894
131321
ENSAPLT00000039182
13495574 - 13628504
132931