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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13535324_13550936_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13535324 - 13550936
Intron Length:
15613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TATTAGTTAATG
Flanking Amino Acid:
HATVPEMSVVGTFVTKVTAT
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
82
0.72
0.8
81.8
29
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
52.9
-0
2.3
65.54
42.3

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026293
13495547 - 13628504
132958
ENSAPLT00000008049
13495574 - 13626894
131321
ENSAPLT00000039182
13495574 - 13628504
132931
ENSAPLT00000034736
13495769 - 13626720
130952