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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13566659_13569421_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13566659 - 13569421
Intron Length:
2763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATTCTGAACA
Flanking Amino Acid:
TQDGIIRVRKPLDFETKKSY
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
69.1
0.43
1
65.6
39.6
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
67.7
0.55
1.4
72.78
39

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008049
13495574 - 13626894
131321
ENSAPLT00000039182
13495574 - 13628504
132931
ENSAPLT00000034736
13495769 - 13626720
130952
ENSAPLT00000026293
13495547 - 13628504
132958