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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13569676_13576656_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13569676 - 13576656
Intron Length:
6981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGCTA
5'SS Class:
major
3'SS Sequence:
GTCTATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATTAAGT
Flanking Amino Acid:
HDPDVSSSPIRFSIDRHTDL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
62.5
43.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
78.2
0.63
0.9
73.1
37
Minor 5ss
33
-1.9
3.6
47.1
48.3
Minor BPS
62.6
0.47
1.9
79.5
42.4

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034736
13495769 - 13626720
130952
ENSAPLT00000026293
13495547 - 13628504
132958
ENSAPLT00000008049
13495574 - 13626894
131321
ENSAPLT00000039182
13495574 - 13628504
132931