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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13593633_13599863_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13593633 - 13599863
Intron Length:
6231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
FLCENGKPGQVIQIVSAVDK
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039182
13495574 - 13628504
132931
ENSAPLT00000026293
13495547 - 13628504
132958
ENSAPLT00000008049
13495574 - 13626894
131321