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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13593633_13626642_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13593633 - 13626642
Intron Length:
33010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCCCTCTTACA
Flanking Amino Acid:
FLCENGKPGQIILSAFWQST
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.3
0.8
0.7
79.6
25.9
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
48.9
-0
2
65.58
40.5

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034736
13495769 - 13626720
130952