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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13599982_13607614_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13599982 - 13607614
Intron Length:
7633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCCATCTGAAAC
Flanking Amino Acid:
NPNFTIKKNEGCRAPDRQIP
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
75.1
0.56
0.9
72.6
36.7
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
49.2
-0
1.6
56.73
41.6

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008049
13495574 - 13626894
131321