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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13599982_13626642_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13599982 - 13626642
Intron Length:
26661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCCCTCTTACA
Flanking Amino Acid:
NPNFTIKKNEDNTLSILAKH
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.3
0.8
0.7
79.6
25.9
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
48.9
-0
2
65.58
40.5

Associated Gene:

Gene:
CDH8
Ensembl Gene ID:
ENSAPLG00000007743
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039182
13495574 - 13628504
132931
ENSAPLT00000026293
13495547 - 13628504
132958