Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1363769_1372963_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1363769 - 1372963

Intron Length:

9195

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

CTTTCTATATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

72.5

39.9

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

74.2

0.55

72.1

Minor 5ss

37.3

-1.4

47.6

47.9

Minor BPS

54.5

0.22

1.9

76.24

41.2

Associated Gene:

Gene:

ZNF536

Ensembl Gene ID:

ENSAPLG00000013219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027294

1133042 - 1373085

240044