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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13715704_13720237_R

Intron Information:

Intron Rank:
138065
Intron Class:
major
Intron Phase:
Intron Coordinates:
13715704 - 13720237
Intron Length:
4534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTATCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTATGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
75.3
0.57
1
71.9
37.8
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
62.9
0.49
1.7
85.35
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021809
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030714
13715626 - 13728619
12994