About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1373086_1421635_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1373086 - 1421635
Intron Length:
48550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
50.4
0.09
1.8
70.72
41.5

Associated Gene:

Gene:
ZNF536
Ensembl Gene ID:
ENSAPLG00000013219
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046286
1133215 - 1421722
288508