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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13872869_13873730_F

Intron Information:

Intron Rank:
148202
Intron Class:
major
Intron Phase:
Intron Coordinates:
13872869 - 13873730
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTGCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.6
0.37
1
61.6
38.9
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
70.5
0.64
1.6
79.69
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029804
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021100
13637335 - 13873790
236456