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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_13872869_13877581_F

Intron Information:

Intron Rank:
148205
Intron Class:
major
Intron Phase:
Intron Coordinates:
13872869 - 13877581
Intron Length:
4713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
86
26.8
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029804
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023183
13688076 - 13878041
189966