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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14033330_14033460_F

Intron Information:

Intron Rank:
137549
Intron Class:
major
Intron Phase:
Intron Coordinates:
14033330 - 14033460
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
GCTCTTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTTCACATACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
67.7
39.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
78.7
0.65
0.8
76.5
32.1
Minor 5ss
31.7
-2.1
3
37.7
40.9
Minor BPS
44.8
-0.4
2
58.64
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024063
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021881
14032890 - 14037211
4322