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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14033661_14033838_F

Intron Information:

Intron Rank:
137550
Intron Class:
major
Intron Phase:
Intron Coordinates:
14033661 - 14033838
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CAATGTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.2
81.5
32.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
82.8
0.74
0.9
73.6
41.5
Minor 5ss
37.6
-1.4
3.3
48.3
41.3
Minor BPS
46.8
-0.1
2
61.02
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024063
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045472
13977874 - 14037211
59338
ENSAPLT00000021881
14032890 - 14037211
4322