About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14106858_14111296_R

Intron Information:

Intron Rank:
140609
Intron Class:
major
Intron Phase:
Intron Coordinates:
14106858 - 14111296
Intron Length:
4439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTCCTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.9
0.58
0.9
73.3
34.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
70.1
0.61
1.3
75.83
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022993
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035151
14096574 - 14111451
14878