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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14122640_14126504_R

Intron Information:

Intron Rank:
135382
Intron Class:
major
Intron Phase:
Intron Coordinates:
14122640 - 14126504
Intron Length:
3865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTATC
5'SS Class:
major
3'SS Sequence:
TTCCCCAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCCCCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
77.9
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.3
0.35
1
64.2
35.6
Minor 5ss
46
-0.4
2.6
60.2
38.6
Minor BPS
55.2
0.24
2
78.67
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020253
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020378
14112630 - 14126552
13923