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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14133971_14139364_R

Intron Information:

Intron Rank:
155193
Intron Class:
major
Intron Phase:
Intron Coordinates:
14133971 - 14139364
Intron Length:
5394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.1
0.57
0.9
69.7
35.2
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
59.6
0.38
1.8
79.68
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030989
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034938
14133891 - 14140346
6456