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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14172466_14174083_F

Intron Information:

Intron Rank:
142251
Intron Class:
major
Intron Phase:
Intron Coordinates:
14172466 - 14174083
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
84.4
1.16
1
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026607
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025553
14171547 - 14179091
7545
ENSAPLT00000018941
14171547 - 14177729
6183