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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14176459_14176664_F

Intron Information:

Intron Rank:
142253
Intron Class:
major
Intron Phase:
Intron Coordinates:
14176459 - 14176664
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TACCCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
84.8
0.78
0.9
80.5
37
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
68.5
0.66
1.2
77.44
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026607
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018941
14171547 - 14177729
6183