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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14186716_14187032_R

Intron Information:

Intron Rank:
144573
Intron Class:
major
Intron Phase:
Intron Coordinates:
14186716 - 14187032
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAATTC
5'SS Class:
major
3'SS Sequence:
CTTTCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GTTGACTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
69.6
35.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
84.5
0.78
0.7
79.8
25.8
Minor 5ss
42.3
-0.8
3.2
60
44.7
Minor BPS
69
0.59
1.6
77.36
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037452
14185279 - 14187093
1815