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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_14260372_14269235_R

Intron Information:

Intron Rank:
154255
Intron Class:
major
Intron Phase:
Intron Coordinates:
14260372 - 14269235
Intron Length:
8864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
ACAACCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.3
37
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
45.7
-0.5
2.8
59.9
39.8
Minor BPS
55.7
0.16
1.5
59.6
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030456
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040315
14245112 - 14270797
25686